This paper shows a chemical method for structural probing of function within DNA molecules:
"Nucleotide analog interference mapping of DNA (dNAIM) is here introduced as a new non-enzymatic interference-based approach that enables high-throughput identification of essential nucleobase functional groups in DNA aptamers and in the catalytic core of deoxyribozymes. Nucleobase-modified ribonucleotides are statistically incorporated into DNA by solid-phase synthesis, employing the 2’-OH group as a chemical tag for analysis of interference effects."
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